halophFGD

Basic Information

Locus ID: add.evm.TU.utg000023l.34

Species & Taxonomic ID: Kandelia candel & 61147

Genome Assembly: GCA_037832225.1

Description: LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
PERG.utg000023l	872793	873822	-	add.evm.TU.utg000023l.34

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.83	26,311.32 Da	48.45	105.26	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	10	48	7.3E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	7	68	3.4E-10	IPR036047
SUPERFAMILY	SSF52047	RNI-like	98	223	9.81E-5	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	59	224	1.7E-5	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G51370.2	F-box/RNI-like/FBD-like domains-containing protein.	0
RefSeq	XP_009796617.1	PREDICTED: F-box/LRR-repeat protein At3g58930-like [Nicotiana sylvestris]	0
Swiss-Prot	Q6DBN6	F-box/FBD/LRR-repeat protein At1g51370 OS=Arabidopsis thaliana OX=3702 GN=At1g51370 PE=2 SV=1	0
TrEMBL	A0A1U7XXB1	F-box/LRR-repeat protein At3g58930-like OS=Nicotiana sylvestris OX=4096 GN=LOC104243163 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_18_RagTag.296, evm.TU.Scaffold_18_RagTag.614
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-27817
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14567
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000023l.34
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10492, nbisL1-mrna-24048