Basic Information
Locus ID:
add.evm.TU.utg000023l.13
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000023l | 226446 | 226787 | + | add.evm.TU.utg000023l.13 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 13,011.92 Da | 53.11 | 85.40 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 47 | 90 | 2.0E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 96 | 7.46E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 100 | 1.3E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 90 | 9.405901 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022869568.1 | RING-H2 finger protein ATL52-like [Olea europaea var. sylvestris] | 0 |
| TrEMBL | B9S5S5 | RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0653430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.639, BH05.691, CH05.795 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0401660, gene-QOZ80_5BG0450220 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0031470.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_010423, gene-QYE76_010463, gene-QYE76_051207 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G004480, Oco10G004290 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11490.1, LOC_Os05g11860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G083400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G025740, Chr18G004300, Chr22G012960 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G230700, Tel3E01G248200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG018190, gene_TRIDC1BG022260 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G126200.1.cds1, TraesCS1B02G145400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17972, nbis-gene-41783 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.13 |