Basic Information
Locus ID:
add.evm.TU.utg000019l.31
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000019l | 660381 | 660914 | + | add.evm.TU.utg000019l.31 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 19,543.46 Da | 59.00 | 71.07 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 24 | 67 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 70 | 1.24E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 75 | 3.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 25 | 66 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 25 | 67 | 12.061441 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 177 | - | - |
| Coils | Coil | Coil | 142 | 162 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48030.2 | - | 0 |
| RefSeq | XP_030956167.1 | E3 ubiquitin-protein ligase ATL4-like [Quercus lobata] | 0 |
| Q7X843 | RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7N2L0A1 | RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology