Basic Information
Locus ID:
add.evm.TU.utg000018l.85
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 1767271 | 1769292 | - | add.evm.TU.utg000018l.85 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 74,179.83 Da | 47.13 | 92.87 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 205 | 242 | 4.38171E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 402 | 643 | 5.6E-39 | IPR000719 |
| Pfam | PF01476 | LysM domain | 206 | 249 | 5.0E-6 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 204 | 249 | 3.01E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 351 | 644 | 1.04E-63 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 204 | 258 | 1.5E-6 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 442 | 663 | 6.3E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 351 | 440 | 1.6E-14 | - |
| SMART | SM00257 | LysM_2 | 205 | 249 | 4.1E-6 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 356 | 654 | 30.619204 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 204 | 248 | 10.337522 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_002307830.3 | protein LYK5 [Populus trichocarpa] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YXL4 | Protein LYK5-like OS=Populus deltoides OX=3696 GN=H0E87_011536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology