Basic Information
Locus ID:
add.evm.TU.utg000018l.309
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 8576374 | 8577285 | + | add.evm.TU.utg000018l.309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 25,848.99 Da | 62.94 | 67.37 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 124 | 169 | 6.0E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 125 | 170 | 2.53E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 120 | 172 | 6.4E-9 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 130 | 169 | 8.981562 | IPR000626 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 5.0 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021619212.1 | E3 ubiquitin-protein ligase UPL5 isoform X3 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2JS98 | E3 ubiquitin-protein ligase UPL5 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21971 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17924 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.309 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17998 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11300 |