Basic Information
Locus ID:
add.evm.TU.utg000018l.223
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
UBP26
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 7106481 | 7107712 | + | add.evm.TU.utg000018l.223 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 13,377.90 Da | 32.56 | 91.94 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 6 | 47 | 7.8E-6 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 6 | 44 | 7.85E-7 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 4 | 67 | 2.7E-7 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 65 | 10.877336 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49600.1 | ubiquitin-specific protease 26. Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1. | 0 |
| RefSeq | XP_018845678.1 | ubiquitin carboxyl-terminal hydrolase 26 [Juglans regia] | 0 |
| Q9SCJ9 | Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana OX=3702 GN=UBP26 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2N9EF41 | Ubiquitin carboxyl-terminal hydrolase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2475 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18183 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.223 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003029 |