Basic Information
Locus ID:
add.evm.TU.utg000018l.209
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 6712876 | 6714306 | + | add.evm.TU.utg000018l.209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 53,023.22 Da | 48.22 | 87.23 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 42 | 83 | 4.3E-8 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 218 | 266 | 8.2E-10 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 173 | 214 | 1.2E-10 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 93 | 385 | 6.67E-36 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 83 | 9.32E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 96 | 384 | 2.6E-33 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 40 | 95 | 1.3E-5 | - |
| SMART | SM00612 | kelc_smart | 182 | 228 | 6.1E-8 | IPR006652 |
| SMART | SM00256 | fbox_2 | 45 | 85 | 8.3E-7 | IPR001810 |
| SMART | SM00612 | kelc_smart | 229 | 279 | 0.094 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 39 | 85 | 11.166616 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22040.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_002285816.1 | PREDICTED: F-box/kelch-repeat protein At1g22040 [Vitis vinifera] | 0 |
| Q9LM55 | F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2L1F6 | F-box/kelch-repeat protein At1g22040-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28461, jg30131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009268 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g222660 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41458, Sbi_jg48761 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27943 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005043 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55360, Sgl60707, Sgl61219 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019790, gene:ENSEOMG00000039938 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0000580, CQ.Regalona.r1.9AG0023890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30101850 |
| Apiaceae | Apium graveolens | 1 | Ag9G00339 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G006530, COCNU_05G006460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713316, gene-LOC120105101 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2639.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22415 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G22040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007536m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19550.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g029920.2N, BniB03g029930.2N, BniB04g037210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0649 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G0699, Cgl09G2154 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10770 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11036 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1003, evm.TU.LG08.1137 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002081 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2386, AH01.4948, BH01.2720, CH01.2900 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0121920, gene-QOZ80_2AG0134970 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0589440.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023156 |
| Poaceae | Oryza coarctata | 3 | Oco04G013000, Oco19G002860, Oco20G002990 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g36520.1, LOC_Os10g21930.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G258800, gene-BS78_04G172800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204263 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G007710, Chr09G013540, Chr13G009410, Chr13G017170 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G398600, Tel7E01G045300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG069730, gene_TRIDC6AG030790 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4A02G472100.1.cds1, TraesCS6B02G227500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb173330_P001, Zm00001eb182900_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13115, Zma_g16535 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1874, evm.TU.LG08.1030, evm.TU.LG15.1283 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1034, evm.TU.Scaffold_8_RagTag.705 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18808, nbisL1-mrna-9534 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19176, nbisL1-mrna-2144 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18251, nbisL1-mrna-6855 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.309, add.evm.TU.utg000018l.209 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003009, Maker00010634 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17889, nbisL1-mrna-20019 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20345, nbisL1-mrna-9909 |
| Salicaceae | Populus euphratica | 2 | populus_peu14659, populus_peu32323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598765 |
| Solanaceae | Solanum chilense | 1 | SOLCI005218600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005039 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3662 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1323 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29750.v3.1 |