Basic Information
Locus ID:
add.evm.TU.utg000018l.141
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000018l | 3436413 | 3438332 | - | add.evm.TU.utg000018l.141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 71,891.89 Da | 47.03 | 62.21 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 157 | 207 | 2.63579E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 226 | 289 | 2.0E-12 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 311 | 354 | 3.8E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 235 | 2.05E-15 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 598 | 622 | 1.53E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 296 | 1.92E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 302 | 361 | 1.67E-15 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 285 | 528 | 1.2E-72 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 239 | 1.1E-14 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 596 | 626 | 7.0E-6 | - |
| SMART | SM00547 | zf_4 | 597 | 621 | 1.1E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 573 | 596 | 0.072 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 226 | 289 | 2.7E-20 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 293 | 358 | 0.0087 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 595 | 624 | 8.433784 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 571 | 594 | 8.140187 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 153 | 362 | 46.360764 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 203 | 8.919052 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 599 | 618 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 66 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_034887515.1 | probable E3 ubiquitin-protein ligase ARI8 [Populus alba] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2NHI9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology