Basic Information
Locus ID:
add.evm.TU.utg000016l.284
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 5279540 | 5279932 | - | add.evm.TU.utg000016l.284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 14,867.14 Da | 27.89 | 84.77 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 63 | 9.94E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 79 | 3.3E-7 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050243823.1 | F-box protein At5g49610-like [Quercus robur] | 0 |
| TrEMBL | A0A2N9FAF4 | F-box domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_17537, gene_17538, gene_18174, gene_18175, gene_18176 ... |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014614, Ah014657 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002990 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg28880 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6462, Seu_jg6840 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl02564, Sgl07719, Sgl29549 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004485, gene:ENSEOMG00000007793 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0005320, CQ.Regalona.r1.8BG0004300 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285400 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.284 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18723 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611587 |