Basic Information
Locus ID:
add.evm.TU.utg000016l.177
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000016l | 3396539 | 3397549 | + | add.evm.TU.utg000016l.177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 38,049.17 Da | 45.42 | 82.11 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 193 | 0.26 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 326 | 1.13E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 333 | 6.5E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 155 | 193 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 152 | 0.56 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 0.0039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 240 | 42.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 284 | 8.703868 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021289421.1 | WD repeat-containing protein LWD1-like [Herrania umbratica] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3HDM3 | WD_REPEATS_REGION domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29674 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology