Basic Information
Locus ID:
add.evm.TU.utg000015l.158
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000015l | 5553622 | 5554476 | + | add.evm.TU.utg000015l.158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 29,930.28 Da | 42.12 | 94.82 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 93 | 224 | 4.8E-17 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 77 | 225 | 2.75E-24 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 58 | 224 | 2.7E-17 | IPR036378 |
| SMART | SM00554 | fasc_3 | 120 | 225 | 6.1E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 79 | 222 | 19.540722 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 41 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60490.1 | FASCICLIN-like arabinogalactan-protein 12. | 0 |
| RefSeq | XP_024441931.1 | fasciclin-like arabinogalactan protein 12 [Populus trichocarpa] | 0 |
| Q8LEE9 | Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2K1XGF0 | FAS1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G013300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology