Basic Information
Locus ID:
add.evm.TU.utg000015l.148
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
lysM domain receptor-like kinase 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000015l | 5285458 | 5286762 | - | add.evm.TU.utg000015l.148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 48,116.75 Da | 49.94 | 81.57 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 132 | 400 | 2.1E-23 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 76 | 407 | 5.05E-41 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 170 | 421 | 4.1E-37 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 56 | 168 | 5.3E-10 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 53 | 411 | 25.23415 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57120.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021673742.1 | lysM domain receptor-like kinase 3 [Hevea brasiliensis] | 0 |
| F4IB81 | LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=LYK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835MQH7 | Protein kinase domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf09G0006100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14547, jg2773, jg8239 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1573, gene_3325 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022704, Ah037904 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g001490, BVRB_9g205340 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2628, Sbi_jg3737, Sbi_jg48991, Sbi_jg60105 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg24287, Seu_jg6244 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000725, GOSA_00015867 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl10748, Sgl16104, Sgl78459, Sgl78468, Sgl80968 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016122, gene:ENSEOMG00000017093 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0003840, CQ.Regalona.r1.2BG0027510 ... |
| Apiaceae | Apium graveolens | 2 | Ag11G04634, Ag6G02261 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G010500, COCNU_09G008590, scaffold124390G000010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103695734, gene-LOC103705449, gene-LOC103707015 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1886.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G00423, FtriNA12129, FtriNA16823 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G57120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005991m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g056060.2N, BniB08g071880.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7341 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1050, evm.TU.LG09.881 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00015959, Pov_00018278, Pov_00040299 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05266, Lb1G05273 |
| Poaceae | Echinochloa crus-galli | 1 | AH06.800 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0150690, gene-QOZ80_2BG0206120 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0630250.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020601, gene-QYE76_026533 |
| Poaceae | Oryza coarctata | 3 | Oco03G025510, Oco04G026000, Oco17G012390 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g57440.1, LOC_Os09g39860.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G322400, gene-BS78_10G088400, gene-BS78_K107400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604502 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr11G020140, Chr14G003810, Chr15G000580, Chr21G003130 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G016500, Tel6E01G715500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4BG001750, gene_TRIDC6AG058460 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4B02G002500.1.cds1, TraesCS4D02G000800.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb191240_P001, Zm00001eb259120_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35066, nbis-gene-8294 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14724, Zma_g31586 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2042, evm.TU.LG06.280, evm.TU.LG16.1605 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g13150, gene.Posoc06g06650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.507, evm.TU.Scaffold_13_RagTag.681 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24351, nbisL1-mrna-24453, nbisL1-mrna-30384 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1511, nbisL1-mrna-8160 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14112, nbisL1-mrna-16065, nbisL1-mrna-19660 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000005l.27, add.evm.TU.utg000015l.148 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015269, Maker00018229 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17138, nbisL1-mrna-18440, nbisL1-mrna-18996 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11882, nbisL1-mrna-15111, nbisL1-mrna-20656 |
| Salicaceae | Populus euphratica | 6 | populus_peu06248, populus_peu06249, populus_peu09705 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604790, gene-LOC132640012 |
| Solanaceae | Solanum chilense | 2 | SOLCI000362200, SOLCI006198600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019016, gene-LOC107021430 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21366_chr09_+, STRG.32524_chr09_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1215, TC03G1453 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32210.v3.1 |