Basic Information
Locus ID:
add.evm.TU.utg000015l.118
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000015l | 4455618 | 4456841 | - | add.evm.TU.utg000015l.118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 45,525.81 Da | 43.99 | 114.74 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 4.59456E-22 | - |
| Pfam | PF04564 | U-box domain | 6 | 76 | 9.9E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 79 | 2.18E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 108 | 372 | 4.61E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 6.7E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 390 | 1.5E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 1.4E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 35.225342 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_002513723.3 | E3 ubiquitin-protein ligase PUB23, partial [Ricinus communis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | B9RJ04 | RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_1754100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology