Basic Information
Locus ID:
add.evm.TU.utg000013l.59
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000013l | 1441060 | 1442145 | - | add.evm.TU.utg000013l.59 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 39,672.53 Da | 56.01 | 84.49 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 136 | 179 | 1.29351E-19 | - |
| Pfam | PF13639 | Ring finger domain | 136 | 179 | 5.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 185 | 1.09E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 182 | 2.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 137 | 178 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 179 | 12.563043 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002521028.2 | RING-H2 finger protein ATL47 [Ricinus communis] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | B9S4M2 | Ring finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0993520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology