Basic Information
Locus ID:
add.evm.TU.utg000013l.136
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000013l | 5348073 | 5349398 | - | add.evm.TU.utg000013l.136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 49,255.73 Da | 45.48 | 99.03 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 76 | 9.77028E-25 | - |
| Pfam | PF04564 | U-box domain | 31 | 102 | 4.3E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 130 | 420 | 5.76E-19 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 107 | 3.1E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 125 | 422 | 1.6E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 104 | 5.3E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 3.2E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 32.704319 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 405 | 425 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021641280.1 | U-box domain-containing protein 21-like [Hevea brasiliensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MS09 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_042023 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology