Basic Information
Locus ID:
add.evm.TU.utg000012l.42
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
F-box kelch-repeat protein At1g57790-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000012l | 885450 | 886592 | - | add.evm.TU.utg000012l.42 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 44,115.61 Da | 50.04 | 80.74 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 36 | 70 | 7.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 36 | 70 | 1.7E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 36 | 75 | 6.0E-9 | - |
| SMART | SM00256 | fbox_2 | 40 | 79 | 3.7E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 34 | 96 | 9.894885 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 9 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021671109.1 | F-box protein At1g49360-like [Hevea brasiliensis] | 0 |
| TrEMBL | A0A1U8AZW7 | F-box/kelch-repeat protein At1g57790-like OS=Nelumbo nucifera OX=4432 GN=LOC104605620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30086450, pistato.v30086460 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2385, evm.TU.LG04.1827 |
| Rhizophoraceae | Bruguiera sexangula | 8 | evm.TU.Scaffold_1_RagTag.171, evm.TU.Scaffold_1_RagTag.177 ... |
| Rhizophoraceae | Carallia pectinifolia | 9 | nbisL1-mrna-3224, nbisL1-mrna-3384, nbisL1-mrna-3441 ... |
| Rhizophoraceae | Ceriops tagal | 5 | nbisL1-mrna-19350, nbisL1-mrna-45, nbisL1-mrna-5667 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13717, nbisL1-mrna-13755, nbisL1-mrna-5245 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.27, add.evm.TU.utg000012l.42 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19896, nbisL1-mrna-19897, nbisL1-mrna-21967 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-158 |