Basic Information
Locus ID:
add.evm.TU.utg000009l.400
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 10100283 | 10101434 | - | add.evm.TU.utg000009l.400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 29,436.70 Da | 31.70 | 91.26 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02225 | PA domain | 67 | 146 | 2.7E-8 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 86 | 149 | 6.54E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 266 | 1.69E-5 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 21 | 159 | 1.9E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 267 | 1.2E-5 | IPR013083 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_015899589.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X2 [Ziziphus jujuba var. spinosa] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2VHI8 | PA domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D03G008800v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology