Basic Information
Locus ID:
add.evm.TU.utg000009l.218
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000009l | 6781898 | 6783139 | - | add.evm.TU.utg000009l.218 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 46,092.20 Da | 49.87 | 105.33 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 9.7987E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 75 | 9.7E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 79 | 5.74E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 390 | 4.74E-16 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 92 | 401 | 8.0E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 2.9E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 2.2E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 40.665447 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_006381941.1 | E3 ubiquitin-protein ligase PUB22 [Populus trichocarpa] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YI64 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_012172 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology