Basic Information
Locus ID:
add.evm.TU.utg000008l.478
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 12397072 | 12402499 | + | add.evm.TU.utg000008l.478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 60,207.01 Da | 30.82 | 78.00 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 27 | 363 | 1.85409E-156 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 33 | 357 | 7.4E-84 | IPR001223 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 373 | 440 | 4.1E-9 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 34 | 360 | 3.44E-71 | IPR017853 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 467 | 513 | 2.68E-5 | IPR011009 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 263 | 328 | 3.8E-13 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 358 | 1.1E-115 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 469 | 528 | 7.7E-7 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 370 | 468 | 3.4E-6 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 262 | 328 | 1.1E-115 | IPR029070 |
| SMART | SM00636 | 2g34 | 29 | 357 | 9.6E-110 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 29 | 373 | 72.355766 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | B9HAQ4 | GH18 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G188300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology