Basic Information
Locus ID:
add.evm.TU.utg000008l.400
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000008l | 10286804 | 10288237 | + | add.evm.TU.utg000008l.400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 53,743.54 Da | 48.08 | 69.39 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 194 | 241 | 2.2E-7 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 371 | 467 | 7.7E-32 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 98 | 259 | 5.8E-29 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 197 | 230 | 3.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 168 | 195 | 0.0019 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 194 | 228 | 11.772493 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 97 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021672854.1 | pentatricopeptide repeat-containing protein At2g15690-like [Hevea brasiliensis] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2Q3K9 | Uncharacterized protein MANES_16G103500 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology