Basic Information
Locus ID:
add.evm.TU.utg000007l.40
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000007l | 6972921 | 6974030 | - | add.evm.TU.utg000007l.40 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 41,589.98 Da | 62.05 | 72.63 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 143 | 186 | 4.51586E-17 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 193 | 1.54E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 191 | 1.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 185 | 2.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 225 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024456416.1 | E3 ubiquitin-protein ligase Os04g0590900 [Populus trichocarpa] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8DDM7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_004702 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology