Basic Information
Locus ID:
add.evm.TU.utg000007l.38
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000007l | 6905032 | 6906288 | - | add.evm.TU.utg000007l.38 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 45,768.67 Da | 39.61 | 75.77 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 148 | 0.0069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 281 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 320 | 4.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 108 | 409 | 6.59E-44 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 33 | 110 | 2.1E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 198 | 416 | 6.2E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 111 | 197 | 1.4E-6 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 75 | 102 | 0.011 | IPR000571 |
| SMART | SM00320 | WD40_4 | 284 | 321 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 368 | 43.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 31 | 56 | 4.2E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 244 | 281 | 3.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 148 | 4.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 408 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 233 | 14.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 251 | 283 | 9.230148 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 31 | 57 | 12.633598 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 116 | 157 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 116 | 148 | 9.941962 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 75 | 103 | 11.506907 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 320 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 290 | 11.878597 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 268 | 282 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 308 | 322 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 135 | 149 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 268 | 282 | 4.1E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_029130475.1 | zinc finger CCCH domain-containing protein 48 [Cajanus cajan] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A151U0R5 | Zinc finger CCCH domain-containing protein 48 OS=Cajanus cajan OX=3821 GN=KK1_005491 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology