Basic Information
Locus ID:
add.evm.TU.utg000007l.157
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000007l | 9333855 | 9334379 | - | add.evm.TU.utg000007l.157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 20,230.89 Da | 48.42 | 82.36 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 95 | 139 | 2.78291E-17 | - |
| Pfam | PF13639 | Ring finger domain | 94 | 139 | 8.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 146 | 2.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 143 | 9.7E-20 | IPR013083 |
| SMART | SM00744 | ringv_2 | 95 | 139 | 0.0021 | IPR011016 |
| SMART | SM00184 | ring_2 | 96 | 138 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 139 | 12.430266 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_002509838.1 | brassinosteroid-responsive RING protein 1 [Ricinus communis] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | B9RCF4 | Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1687660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology