Basic Information
Locus ID:
add.evm.TU.utg000006l.62
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase RHA1B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 1429511 | 1430017 | + | add.evm.TU.utg000006l.62 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 19,459.95 Da | 51.45 | 80.66 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 94 | 137 | 1.94257E-12 | - |
| Pfam | PF13639 | Ring finger domain | 94 | 137 | 8.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 143 | 8.01E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 143 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 94 | 136 | 6.2E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 93 | 137 | 0.001 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 137 | 12.017182 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | NP_001295726.1 | E3 ubiquitin-protein ligase RHA1B [Jatropha curcas] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | G9DD71 | Ubiquitin-protein ligase E3 OS=Jatropha curcas OX=180498 GN=RHF PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology