Basic Information
Locus ID:
add.evm.TU.utg000006l.50
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 1178430 | 1178993 | + | add.evm.TU.utg000006l.50 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 20,729.53 Da | 64.24 | 91.82 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 141 | 184 | 1.7464E-16 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 184 | 5.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 186 | 3.77E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 187 | 8.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 183 | 6.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 184 | 12.651561 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052188600.1 | RING-H2 finger protein ATL16 [Diospyros lotus] | 0 |
| Q9C7I1 | RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3KC75 | RING-type E3 ubiquitin transferase OS=Corchorus olitorius OX=93759 GN=COLO4_09394 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB02g014130.2N |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.349 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11222, nbisL1-mrna-11223, nbisL1-mrna-11227 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10588, nbisL1-mrna-6105 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.50 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20387 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7095 |