Basic Information
Locus ID:
add.evm.TU.utg000006l.376
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
BAH and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 9271897 | 9273128 | - | add.evm.TU.utg000006l.376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 24,453.73 Da | 49.88 | 69.95 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 139 | 186 | 9.8E-11 | IPR019787 |
| Pfam | PF01426 | BAH domain | 21 | 134 | 4.5E-20 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 129 | 189 | 2.44E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 200 | 1.1E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 19 | 132 | 4.8E-26 | IPR043151 |
| SMART | SM00439 | BAH_4 | 19 | 135 | 3.0E-35 | IPR001025 |
| SMART | SM00249 | PHD_3 | 139 | 186 | 5.0E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 137 | 188 | 9.0895 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 19 | 135 | 21.829489 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 140 | 185 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_044465965.1 | chromatin remodeling protein EBS-like isoform X1 [Mangifera indica] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6A217 | chromatin remodeling protein EBS-like OS=Durio zibethinus OX=66656 GN=LOC111305609 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology