Basic Information
Locus ID:
add.evm.TU.utg000006l.272
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000006l | 7669391 | 7674185 | + | add.evm.TU.utg000006l.272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 87,827.09 Da | 63.58 | 70.47 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 399 | 435 | 1.6E-8 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 451 | 751 | 5.36E-22 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 399 | 458 | 3.4E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 396 | 439 | 3.9E-8 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 444 | 760 | 8.9E-16 | IPR015915 |
| SMART | SM00256 | fbox_2 | 403 | 447 | 0.0015 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 234 | - | - |
| Coils | Coil | Coil | 767 | 782 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24760.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021631347.1 | F-box/kelch-repeat protein At3g24760 [Manihot esculenta] | 0 |
| Q3EB08 | F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana OX=3702 GN=At3g24760 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JEQ3 | Uncharacterized protein MANES_12G041900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35497, jg35498, jg8622 |
| Apiaceae | Apium graveolens | 1 | Ag9G02874 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G009030, COCNU_09G009040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723568 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1934.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G32306 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24760.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002571m.g.v1.0, Thhalv10016113m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g22500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g035790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2016 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2125 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2998 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1531 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015110 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0641420 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1192 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11658 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9067 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11254 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.252, add.evm.TU.utg000006l.272 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009451, Maker00013602 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1386, nbisL1-mrna-20675 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19892 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607394 |
| Solanaceae | Solanum chilense | 1 | SOLCI004651400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021218 |