Basic Information
Locus ID:
add.evm.TU.utg000005l.133
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000005l | 5047576 | 5049696 | - | add.evm.TU.utg000005l.133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 79,231.64 Da | 41.97 | 67.51 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 412 | 440 | 2.4E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 381 | 407 | 0.0027 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 578 | 696 | 1.4E-38 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 483 | 508 | 0.029 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 313 | 472 | 3.0E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 412 | 445 | 5.5E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 409 | 443 | 10.676364 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 378 | 408 | 9.29524 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 101 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021676193.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like isoform X1 [Hevea brasiliensis] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LYX7 | Uncharacterized protein MANES_01G231600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology