Basic Information
Locus ID:
add.evm.TU.utg000002l.300
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
F-box family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000002l | 7994082 | 7995029 | - | add.evm.TU.utg000002l.300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 34,612.60 Da | 39.34 | 100.51 | 0.00 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78100.1 | F-box family protein. | 0 |
| RefSeq | XP_024456328.2 | F-box protein AUF2 [Populus trichocarpa] | 0 |
| Q9C9S2 | F-box protein AUF1 OS=Arabidopsis thaliana OX=3702 GN=AUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7ZU84 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_019512 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22629 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G07424, Ftri2G31524 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22220.1, AT1G78100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010014m.g.v1.0, Thhalv10018841m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19720.v2.2, Sp5g33240.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g019960.2N, BniB03g030110.2N, BniB03g057450.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq09G0151, Ceq09G0152, Ceq09G0156 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl09G0178, Cgl09G0179, Cgl09G0189 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10640 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1029 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g23290, gene.Posoc06g15380 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1010 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18837 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11463 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6835 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.300 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010555 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20024 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9933 |
| Salicaceae | Populus euphratica | 2 | populus_peu14639, populus_peu32296 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627487 |
| Solanaceae | Solanum chilense | 1 | SOLCI000586200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015713 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19350.v3.1 |