Basic Information
Locus ID:
Zosma47g00060.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
cysteine-rich repeat secretory protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_47 | 97421 | 98699 | - | Zosma47g00060.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 41,220.98 Da | 49.08 | 85.64 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 57 | 152 | 2.4E-17 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 175 | 268 | 1.1E-8 | IPR002902 |
| Gene3D | G3DSA:3.30.430.20 | - | 50 | 156 | 6.1E-21 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 164 | 270 | 2.5E-14 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 161 | 270 | 13.872793 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 52 | 156 | 18.299271 | IPR002902 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 308 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21990.1 | Domain of unknown function (DUF26). | 0 |
| RefSeq | XP_020092883.1 | - | 0 |
| Q9LRK8 | - | 0 | |
| TrEMBL | A0A0K9P2G4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Zosteraceae | Zostera marina | 14 | Zosma02g13370.v3.1, Zosma02g13390.v3.1, Zosma02g13420.v3.1 ... |