Basic Information
Locus ID:
Zosma25g00020.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_25 | 60410 | 70438 | + | Zosma25g00020.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 74,383.58 Da | 33.20 | 87.11 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00450 | Serine carboxypeptidase | 391 | 675 | 1.9E-29 | IPR001563 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 26 | 349 | 1.7E-30 | IPR036322 |
| SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 391 | 674 | 7.7E-38 | IPR029058 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 351 | 4.4E-37 | IPR015943 |
| Gene3D | G3DSA:3.40.50.1820 | alpha/beta hydrolase | 377 | 675 | 2.3E-34 | IPR029058 |
| SMART | SM00320 | WD40_4 | 68 | 109 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 202 | 4.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 161 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 295 | 3.5E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 211 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 298 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 304 | 11.176815 | IPR001680 |
| ProSitePatterns | PS00131 | Serine carboxypeptidases, serine active site. | 442 | 449 | - | IPR018202 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_020678014.1 | WD repeat-containing protein LWD1 [Dendrobium catenatum] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PHC4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology