Basic Information
Locus ID:
Zosma15g00160.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 211149 | 218617 | - | Zosma15g00160.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 119,043.80 Da | 48.73 | 80.14 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 913 | 1018 | 9.89254E-55 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 309 | 639 | 1.23328E-82 | - |
| CDD | cd16449 | RING-HC | 755 | 791 | 2.98221E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 326 | 717 | 4.3E-65 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 912 | 1008 | 2.0E-15 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 755 | 791 | 3.0E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 648 | 1065 | 3.42E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 298 | 639 | 3.49E-42 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 753 | 792 | 1.66E-9 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 818 | 1066 | 1.1E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 403 | 501 | 8.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 522 | 652 | 1.5E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 280 | 373 | 2.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 740 | 805 | 3.0E-9 | IPR013083 |
| SMART | SM00490 | helicmild6 | 925 | 1008 | 3.1E-19 | IPR001650 |
| SMART | SM00487 | ultradead3 | 305 | 616 | 2.1E-25 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 755 | 791 | 10.409105 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 324 | 601 | 11.408182 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 902 | 1061 | 14.885822 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 770 | 779 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 527 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_010908906.1 | - | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P1E4 | Putative DNA repair helicase rad5,16 OS=Zostera marina OX=29655 GN=ZOSMA_442G00010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology