Basic Information
Locus ID:
Zosma07g00380.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 123461 | 126092 | - | Zosma07g00380.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 81,511.59 Da | 37.39 | 94.81 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01894 | EngA1 | 178 | 333 | 5.22557E-56 | - |
| CDD | cd00464 | SK | 548 | 703 | 1.04738E-40 | IPR000623 |
| Pfam | PF01926 | 50S ribosome-binding GTPase | 176 | 290 | 3.2E-22 | IPR006073 |
| Pfam | PF00924 | Mechanosensitive ion channel | 2 | 173 | 1.3E-55 | IPR006685 |
| Pfam | PF01202 | Shikimate kinase | 555 | 710 | 3.4E-28 | IPR031322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 543 | 715 | 8.8E-22 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 176 | 338 | 5.65E-38 | IPR027417 |
| SUPERFAMILY | SSF50182 | Sm-like ribonucleoproteins | 31 | 97 | 1.63E-17 | IPR010920 |
| SUPERFAMILY | SSF82689 | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 98 | 176 | 4.97E-10 | IPR011066 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 384 | 527 | 4.04E-20 | IPR027417 |
| Gene3D | G3DSA:3.30.70.100 | - | 97 | 177 | 1.9E-10 | - |
| Gene3D | G3DSA:1.10.287.1260 | - | 1 | 45 | 7.4E-10 | - |
| Gene3D | G3DSA:2.30.30.60 | - | 47 | 96 | 2.8E-16 | IPR023408 |
| Gene3D | G3DSA:3.40.50.300 | - | 545 | 719 | 2.5E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 394 | 511 | 3.7E-21 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 178 | 330 | 2.8E-38 | IPR027417 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 175 | 326 | 5.2E-24 | IPR005225 |
| PRINTS | PR01100 | Shikimate kinase family signature | 573 | 586 | 3.6E-16 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 620 | 629 | 3.6E-16 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 637 | 654 | 3.6E-16 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 601 | 609 | 3.6E-16 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 549 | 564 | 3.6E-16 | - |
| Hamap | MF_00109 | Shikimate kinase [aroK]. | 546 | 713 | 22.684425 | IPR000623 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 362 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78010.1 | tRNA modification GTPase, putative. | 0 |
| RefSeq | XP_009394390.1 | - | 0 |
| Q30TK8 | - | 0 | |
| TrEMBL | A0A5B9TU58 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13722, jg1948, jg6682, jg6803 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1685 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022961 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4554, Sbi_jg49280 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5962 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000484 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11036, Sgl16444 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015365, gene:ENSEOMG00000033132 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003240, CQ.Regalona.r1.2BG0025240 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055880, pistato.v30242870 |
| Apiaceae | Apium graveolens | 1 | Ag6G00193 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G007680 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717359, gene-LOC120107065 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G11052 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G00234.1, AT4G00290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0974 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1002, Cgl02G1024 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.831 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001441 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03559, Lb1G07413 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3004, AH09.2026, BH07.2829, BH09.2185, CH07.2909 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0196560, gene-QOZ80_4AG0306570 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0186360.1, HORVU.MOREX.r3.7HG0715930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045752, gene-QYE76_045772 |
| Poaceae | Oryza coarctata | 4 | Oco03G018230, Oco04G018980, Oco07G013860, Oco08G013370 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g45690.1, LOC_Os04g48940.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G238700, gene-BS78_06G196200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0307294, Pt_Chr0503701, Pt_Chr0703612 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G023470, Chr23G005920, Chr26G013680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G679400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG057290, gene_TRIDC2BG060130 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G395900.1, TraesCS2B02G414200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb073200_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22257, nbis-gene-22634 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16881, Zma_g20288 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.947, evm.TU.LG24.949 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g02210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.531 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21649 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-91 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017544 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1749 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19619 |
| Salicaceae | Populus euphratica | 1 | populus_peu27659 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632659 |
| Solanaceae | Solanum chilense | 1 | SOLCI005830600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002245, gene-LOC107002246 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1408 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma07g00380.v3.1 |