HalophFGD

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Basic Information
Locus ID: Zosma07g00120.v3.1
Species & Taxonomic ID: Zostera marina & 29655
Genome Assembly: GCA_001185155.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
scaffold_7 27013 32892 + Zosma07g00120.v3.1
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.85 189,693.25 Da 38.98 88.10 -0.36
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd18803 SF2_C_secA 825 994 2.57998E-72 IPR044722
CDD cd17928 DEXDc_SecA 443 818 3.45134E-98 -
CDD cd07302 CHD 1460 1640 2.6393E-61 IPR001054
Pfam PF07516 SecA Wing and Scaffold domain 1023 1242 6.5E-39 IPR011116
Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 1458 1638 1.3E-35 IPR001054
Pfam PF01043 SecA preprotein cross-linking domain 667 763 2.1E-24 IPR011130
Pfam PF07517 SecA DEAD-like domain 407 807 1.2E-108 IPR011115
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 822 1017 2.66E-46 IPR027417
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 1025 1243 5.89E-43 IPR036266
SUPERFAMILY SSF55073 Nucleotide cyclase 1456 1640 1.73E-56 IPR029787
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 405 819 3.4E-66 IPR027417
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 672 772 1.57E-28 IPR036670
Gene3D G3DSA:3.40.50.300 - 427 821 1.5E-146 IPR027417
Gene3D G3DSA:3.90.1440.10 - 632 775 1.5E-146 -
Gene3D G3DSA:3.30.70.1230 Nucleotide cyclase 1453 1645 1.1E-57 IPR029787
Gene3D G3DSA:3.40.50.300 - 822 1025 7.8E-73 IPR027417
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 1026 1245 1.2E-38 -
SMART SM00958 SecA_PP_bind_2 629 763 2.8E-30 IPR011130
SMART SM00044 cyc_6 1424 1624 7.4E-26 IPR001054
SMART SM00957 SecA_DEAD_2 407 807 1.2E-188 IPR011115
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 431 1232 1.4E-255 IPR000185
ProSiteProfiles PS50125 Guanylate cyclase domain profile. 1461 1596 30.826494 IPR001054
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 649 14.954275 IPR014001
ProSiteProfiles PS51196 SecA family profile. 404 1024 127.01506 IPR014018
ProSitePatterns PS01312 SecA family signature. 905 920 - IPR020937
PRINTS PR00906 SecA protein signature 818 831 2.9E-49 IPR000185
PRINTS PR00906 SecA protein signature 518 528 2.9E-49 IPR000185
PRINTS PR00906 SecA protein signature 744 766 2.9E-49 IPR000185
PRINTS PR00906 SecA protein signature 464 488 2.9E-49 IPR000185
PRINTS PR00906 SecA protein signature 502 516 2.9E-49 IPR000185
PRINTS PR00906 SecA protein signature 571 591 2.9E-49 IPR000185
PRINTS PR00906 SecA protein signature 781 798 2.9E-49 IPR000185
Hamap MF_01382 Protein translocase subunit SecA [secA]. 406 1246 17.101608 IPR000185
MobiDBLite mobidb-lite consensus disorder prediction 1268 1289 - -
MobiDBLite mobidb-lite consensus disorder prediction 1268 1282 - -
Gene Ontology
Biological Process:
GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0009190 (cyclic nucleotide biosynthetic process) GO:0017038 (protein import) GO:0035556 (intracellular signal transduction)
Molecular Function:
GO:0005524 (ATP binding)
Cellular Component:
GO:0016020 (membrane)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G01800.1 Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. 0
RefSeq XP_042918427.1 uncharacterized protein CHLRE_12g517900v5 [Chlamydomonas reinhardtii] 0
Swiss-Prot A5WH15 - 0
TrEMBL S7J701 - 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.