Basic Information
Locus ID:
Zosma06g28750.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
U-box domain-containing protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 28084455 | 28093630 | + | Zosma06g28750.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 99,400.37 Da | 42.08 | 103.97 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 442 | 484 | 1.69116E-21 | - |
| CDD | cd06530 | S26_SPase_I | 60 | 162 | 3.29975E-10 | IPR019533 |
| Pfam | PF04564 | U-box domain | 438 | 508 | 3.1E-19 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 727 | 764 | 1.8E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 645 | 682 | 9.5E-7 | IPR000225 |
| SUPERFAMILY | SSF51306 | LexA/Signal peptidase | 57 | 173 | 2.62E-13 | IPR036286 |
| SUPERFAMILY | SSF57850 | RING/U-box | 438 | 512 | 9.08E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 613 | 886 | 2.71E-47 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 438 | 513 | 1.8E-23 | IPR013083 |
| Gene3D | G3DSA:2.10.109.10 | Umud Fragment, subunit A | 50 | 178 | 2.7E-11 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 596 | 891 | 2.1E-57 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 441 | 504 | 3.9E-28 | IPR003613 |
| SMART | SM00185 | arm_5 | 643 | 683 | 0.018 | IPR000225 |
| SMART | SM00185 | arm_5 | 684 | 724 | 3.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 806 | 846 | 8.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 766 | 805 | 0.11 | IPR000225 |
| SMART | SM00185 | arm_5 | 725 | 765 | 12.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 777 | 818 | 11.8474 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 654 | 696 | 13.4924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 437 | 511 | 30.457512 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 736 | 778 | 9.1874 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 588 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54790.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_020079680.1 | - | 0 |
| Q8GWV5 | U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9NKF3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16195, jg35423, jg37814, jg8693 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_19290, gene_2744, gene_3029, gene_3030 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000149, Ah018340, Ah018341 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g048940, BVRB_3g048960, BVRB_5g121430 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg31384, Sbi_jg37832, Sbi_jg57883, Sbi_jg5978 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25515, Seu_jg28141 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00006111, GOSA_00006112, GOSA_00026720 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl00978, Sgl00980, Sgl05933, Sgl06037, Sgl06045, Sgl06053 ... |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000001160, gene:ENSEOMG00000003538 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0008110, CQ.Regalona.r1.3AG0008120 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016300 |
| Apiaceae | Apium graveolens | 2 | Ag10G00891, Ag2G01326 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011910 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721924, gene-LOC120104375 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.812.V1.1, AsparagusV1_Unassigned.74.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G33140 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G06200.1, AT2G31140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008791m.g.v1.0, Thhalv10017243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g05010.v2.2, Sp4g13620.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g012930.2N, BniB01g012940.2N, BniB03g001740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1328 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1395 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07500 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0116s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g24340, gene.Thate08g00260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9713 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1355 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024622 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10276, Lb2G11663 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.24, BH09.98, CH09.66 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0319820, gene-QOZ80_4BG0351230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0100860.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G001160, Oco08G000080 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g01240.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G313500, gene-BS78_06G003400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305972 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G019240, Chr25G016870, Chr26G000720, Chr30G014510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G102400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG004400, gene_TRIDC2BG005000 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G041900.1, TraesCS2B02G054400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb089650_P001, Zm00001eb418960_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46855 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g19207, Zma_g20772, Zma_g20774 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2928, evm.TU.LG02.1214, evm.TU.LG02.1215 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1103, evm.TU.Scaffold_9_RagTag.1005 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11571, nbisL1-mrna-21180 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17964, nbisL1-mrna-6162 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10288, nbisL1-mrna-18304 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.462, evm.TU.utg000006l.378 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009270, Maker00013090 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1449, nbisL1-mrna-9911 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19814, nbisL1-mrna-5043 |
| Salicaceae | Populus euphratica | 2 | populus_peu15195, populus_peu32863 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610541 |
| Solanaceae | Solanum chilense | 1 | SOLCI003796200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029142 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.2289_chr01_+, gene_12574, gene_17441 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0895, TC05G1716, TC07G2411 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28750.v3.1 |