Basic Information
Locus ID:
Zosma06g27790.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 27287079 | 27289742 | - | Zosma06g27790.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 97,839.99 Da | 37.51 | 94.53 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 369 | 391 | 0.28 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 270 | 294 | 0.0025 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 613 | 639 | 0.0051 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 507 | 536 | 7.1E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 299 | 323 | 1.1E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 714 | 739 | 6.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 780 | 803 | 0.0036 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 164 | 187 | 0.011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 686 | 711 | 2.3E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 89 | 113 | 0.011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 399 | 419 | 0.51 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 746 | 773 | 0.13 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 258 | 325 | 5.5E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 773 | 841 | 1.9E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 664 | 761 | 2.8E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 326 | 463 | 9.5E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 563 | 663 | 9.3E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 464 | 558 | 2.1E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 21 | 144 | 1.8E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 145 | 253 | 3.0E-16 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 507 | 536 | 9.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 780 | 803 | 9.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 269 | 294 | 7.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 686 | 712 | 1.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 89 | 114 | 3.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 299 | 323 | 5.8E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 505 | 539 | 10.840783 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 611 | 645 | 9.470621 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 681 | 715 | 9.437737 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39620.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_009421324.1 | - | 0 |
| O80647 | Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9PHG0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24434 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033616 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19889, Sbi_jg44652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17347 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024039 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63698, Sgl68200 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021560, gene:ENSEOMG00000050726 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0009780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175040 |
| Apiaceae | Apium graveolens | 1 | Ag10G01116 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000840 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.46.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28911 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g025470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0739 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07690 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g02680 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1452, evm.TU.LG05.1977 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1706 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26022 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7668 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4515, nbisL1-mrna-4516 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.357 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9474 |
| Salicaceae | Populus euphratica | 1 | populus_peu06399 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613496, gene-LOC132615578 |
| Solanaceae | Solanum chilense | 1 | SOLCI007470700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015926 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2306_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0915 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27790.v3.1 |