Basic Information
Locus ID:
Zosma06g27640.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 27102997 | 27135401 | + | Zosma06g27640.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 85,827.67 Da | 46.56 | 89.05 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 688 | 723 | 1.6E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 262 | 375 | 8.2E-8 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 141 | 398 | 1.03E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 525 | 590 | 2.65E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 686 | 728 | 1.21E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 522 | 590 | 1.2E-7 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 655 | 738 | 3.4E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 143 | 413 | 2.5E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 218 | 382 | 9.4E-8 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 525 | 589 | 3.2E-4 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 656 | 724 | 0.015 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 524 | 590 | 11.77117 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 688 | 725 | 10.484526 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 146 | 395 | 17.539885 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 757 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_010923073.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Elaeis guineensis] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9PHE2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology