Basic Information
Locus ID:
Zosma06g26830.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 26433551 | 26435475 | + | Zosma06g26830.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 46,971.16 Da | 43.31 | 89.10 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 252 | 382 | 1.45132E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 44 | 241 | 2.76741E-134 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 265 | 373 | 6.2E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 64 | 225 | 3.7E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 108 | 393 | 2.59E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 248 | 412 | 8.0E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 31 | 247 | 1.3E-66 | IPR027417 |
| SMART | SM00490 | helicmild6 | 292 | 373 | 2.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 58 | 255 | 1.5E-57 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 240 | 29.144938 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 251 | 412 | 25.735935 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 39 | 67 | 10.696912 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 186 | 194 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_042508346.1 | eukaryotic initiation factor 4A-15 [Macadamia integrifolia] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q5S7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology