Basic Information
Locus ID:
Zosma06g25720.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 25593424 | 25598358 | - | Zosma06g25720.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 64,942.57 Da | 19.62 | 99.97 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 272 | 374 | 1.48275E-26 | - |
| CDD | cd00030 | C2 | 454 | 554 | 2.15911E-27 | - |
| Pfam | PF00168 | C2 domain | 270 | 374 | 9.3E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 452 | 554 | 4.8E-27 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 79 | 257 | 3.8E-16 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 268 | 397 | 3.7E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 451 | 569 | 7.83E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 441 | 570 | 6.6E-36 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 263 | 397 | 7.5E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 271 | 371 | 5.9E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 453 | 551 | 1.4E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 251 | 372 | 20.577126 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 73 | 257 | 27.615345 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 434 | 552 | 21.550058 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 495 | 508 | 1.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 469 | 481 | 1.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 517 | 525 | 1.1E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_008788811.2 | synaptotagmin-5-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q422 | Synaptotagmin-5 OS=Zostera marina OX=29655 GN=ZOSMA_107G00350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology