Basic Information
Locus ID:
Zosma06g22110.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
domain phosphoinositide-interacting protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 23138376 | 23142492 | + | Zosma06g22110.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 45,417.38 Da | 47.20 | 78.24 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 298 | 0.025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 379 | 3.83E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 32 | 386 | 1.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 215 | 255 | 0.074 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 168 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 299 | 0.34 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 47 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_010921799.1 | - | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PDU5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology