Basic Information
Locus ID:
Zosma06g20480.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 21732244 | 21733500 | - | Zosma06g20480.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 43,063.70 Da | 39.25 | 89.97 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 197 | 327 | 6.4E-14 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 34 | 103 | 1.4E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 190 | 327 | 2.62E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 173 | 3.14E-16 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 194 | 327 | 5.7E-10 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 167 | 3.8E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 223 | 328 | 3.1E-11 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 184 | 325 | 11.943115 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 23 | 171 | 10.542952 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 368 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_010943291.1 | fasciclin-like arabinogalactan protein 2 [Elaeis guineensis] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P9K9 | Fasciclin-like arabinogalactan protein 10 OS=Zostera marina OX=29655 GN=ZOSMA_314G00080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology