Basic Information
Locus ID:
Zosma06g19470.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
H3K27me3 modified histone binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 20944824 | 20961117 | + | Zosma06g19470.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 119,552.05 Da | 40.55 | 74.95 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 729 | 851 | 2.93126E-46 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 716 | 840 | 2.5E-14 | IPR001650 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 301 | 353 | 4.1E-6 | IPR023780 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 419 | 692 | 1.3E-51 | IPR000330 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 298 | 354 | 6.23E-12 | IPR016197 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 193 | 288 | 4.94E-9 | IPR016197 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 632 | 889 | 8.28E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 379 | 622 | 7.2E-53 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 230 | 2.3E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 636 | 936 | 1.2E-91 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 369 | 635 | 2.8E-81 | IPR038718 |
| Gene3D | G3DSA:2.40.50.40 | - | 287 | 368 | 1.3E-10 | - |
| SMART | SM00487 | ultradead3 | 396 | 597 | 6.5E-31 | IPR014001 |
| SMART | SM00249 | PHD_3 | 173 | 219 | 3.5E-5 | IPR001965 |
| SMART | SM00490 | helicmild6 | 745 | 840 | 3.3E-17 | IPR001650 |
| SMART | SM00298 | chromo_7 | 299 | 371 | 0.0021 | IPR000953 |
| SMART | SM00298 | chromo_7 | 225 | 284 | 0.095 | IPR000953 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 719 | 881 | 15.48335 | IPR001650 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 301 | 378 | 12.539401 | IPR000953 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 412 | 581 | 20.877007 | IPR014001 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 226 | 293 | 9.39 | IPR000953 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 171 | 221 | 9.2408 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 174 | 218 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1029 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 1034 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25170.1 | chromatin remodeling factor CHD3 (PICKLE). Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. | 0 |
| RefSeq | XP_020104196.1 | chromodomain-helicase-DNA-binding protein 3-like [Ananas comosus] | 0 |
| Q9S775 | CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana OX=3702 GN=PKL PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PC86 | SNF2-related OS=Zostera marina OX=29655 GN=ZOSMA_309G00060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1289.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25110 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4081, BH02.4092, CH02.4119 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0307470.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056785, gene-QYE76_056810 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G357300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600062, Pt_Chr0600096 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G003020, Chr05G030190, Chr05G030200, Chr05G030210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G649400, Tel3E01G649500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG058130, gene_TRIDC3BG065190 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G408500.1, TraesCS3D02G403600.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28559 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11666 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02460 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19470.v3.1 |