Basic Information
Locus ID:
Zosma06g18840.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 20356571 | 20362847 | - | Zosma06g18840.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 49,319.90 Da | 47.27 | 75.60 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 34 | 338 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 48 | 336 | 1.2E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 29 | 392 | 6.23E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 22 | 404 | 6.1E-135 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 14 | 441 | 2.7E-203 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 83 | 101 | 2.8E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 175 | 191 | 2.8E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 134 | 154 | 2.8E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 234 | 247 | 2.8E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 113 | 130 | 2.8E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 273 | 283 | 5.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 188 | 203 | 5.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 156 | 179 | 5.5E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 251 | 269 | 2.8E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 50 | 67 | 2.8E-60 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 441 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_008791163.2 | histone deacetylase 6 isoform X3 [Phoenix dactylifera] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P748 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology