Basic Information
Locus ID:
Zosma06g17400.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 19223460 | 19227017 | - | Zosma06g17400.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 48,130.52 Da | 42.16 | 72.59 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 63 | 133 | 4.75326E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 267 | 341 | 1.3573E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 147 | 221 | 5.2813E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 218 | 5.7E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 63 | 129 | 2.1E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 269 | 335 | 5.1E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 140 | 227 | 1.75E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 46 | 139 | 2.69E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 258 | 349 | 5.7E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 143 | 1.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 246 | 346 | 6.4E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 144 | 238 | 2.4E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 62 | 131 | 1.9E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 147 | 220 | 2.6E-20 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 147 | 220 | 9.9E-4 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 268 | 337 | 5.5E-18 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 267 | 341 | 15.76675 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 224 | 16.875351 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 61 | 135 | 15.289199 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_027125672.1 | oligouridylate-binding protein 1B-like [Coffea arabica] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PBY9 | RNA-binding protein OS=Zostera marina OX=29655 GN=ZOSMA_310G00090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology