Basic Information
Locus ID:
Zosma06g13620.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 11575608 | 11576009 | - | Zosma06g13620.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 15,047.22 Da | 49.31 | 63.08 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01754 | A20-like zinc finger | 46 | 66 | 4.1E-8 | IPR002653 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 47 | 86 | 2.85E-9 | - |
| Gene3D | G3DSA:1.20.5.4770 | - | 38 | 91 | 3.7E-16 | - |
| SMART | SM00259 | A20_3 | 45 | 69 | 1.7E-4 | IPR002653 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 42 | 76 | 8.831641 | IPR002653 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36320.1 | A20/AN1-like zinc finger family protein. | 0 |
| RefSeq | XP_010928202.1 | zinc finger A20 and AN1 domain-containing stress-associated protein 6 [Elaeis guineensis] | 0 |
| Q9SJM6 | Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana OX=3702 GN=SAP4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PXR0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13305 |
| Zosteraceae | Zostera marina | 5 | Zosma05g16690.v3.1, Zosma05g16700.v3.1, Zosma05g16720.v3.1 ... |