Basic Information
Locus ID:
Zosma06g11730.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 8094880 | 8097227 | + | Zosma06g11730.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 78,148.02 Da | 43.48 | 96.90 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 230 | 272 | 1.38398E-18 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 434 | 470 | 2.8E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 226 | 293 | 2.8E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 411 | 676 | 9.36E-44 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 299 | 1.06E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 299 | 8.0E-23 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 389 | 684 | 3.7E-51 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 229 | 292 | 5.2E-27 | IPR003613 |
| SMART | SM00185 | arm_5 | 596 | 636 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 473 | 513 | 35.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 430 | 471 | 6.5E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 556 | 595 | 5.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 515 | 555 | 0.048 | IPR000225 |
| SMART | SM00185 | arm_5 | 638 | 678 | 200.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 225 | 299 | 31.598606 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 526 | 568 | 9.8524 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 397 | 441 | 9.0824 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 441 | 478 | 9.6074 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 567 | 608 | 9.3974 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67340.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039143166.1 | - | 0 |
| Q5XEZ8 | U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NZV6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for Zosma06g11730.v3.1.