Basic Information
Locus ID:
Zosma06g09980.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 6316919 | 6317728 | - | Zosma06g09980.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 30,843.49 Da | 60.78 | 105.76 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 51 | 90 | 3.7E-9 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 107 | 1.69E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 143 | 1.4E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 51 | 92 | 0.0027 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 51 | 90 | 10.291081 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 70 | 79 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 175 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034673228.1 | uncharacterized protein LOC117904639 [Vitis riparia] | 0 |
| TrEMBL | A0A0K9PF19 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology