Basic Information
Locus ID:
Zosma06g08510.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 5099866 | 5101441 | + | Zosma06g08510.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 52,337.47 Da | 47.23 | 77.78 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 163 | 436 | 3.63358E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 351 | 0.008 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 401 | 436 | 0.0032 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 180 | 238 | 2.3E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 297 | 7.3E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 144 | 437 | 5.04E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 90 | 439 | 9.8E-113 | IPR015943 |
| SMART | SM00320 | WD40_4 | 354 | 394 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 351 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 436 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 5.6E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 299 | 12.156496 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 213 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 404 | 437 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 404 | 437 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 423 | 437 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_010918104.1 | cell division cycle 20.2, cofactor of APC complex [Elaeis guineensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PBX1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology