Basic Information
Locus ID:
Zosma06g08490.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 5082454 | 5083699 | + | Zosma06g08490.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.91 | 33,389.07 Da | 36.71 | 74.61 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 107 | 192 | 2.0594E-40 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 108 | 192 | 4.6E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 95 | 205 | 1.96E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 72 | 202 | 8.1E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 102 | 192 | 1.2E-25 | - |
| SMART | SM00501 | bright_3 | 106 | 197 | 1.0E-28 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 105 | 196 | 24.221994 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020080091.1 | high mobility group B protein 9-like [Ananas comosus] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P9U8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology