Basic Information
Locus ID:
Zosma06g07100.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 3992325 | 3993059 | + | Zosma06g07100.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 20,791.39 Da | 59.21 | 71.09 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 124 | 166 | 9.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 170 | 7.54E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 170 | 2.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 125 | 165 | 5.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 125 | 166 | 12.799091 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_201513.1 | - | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NIE2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Zosteraceae | Zostera marina | 3 | Zosma06g07100.v3.1, Zosma06g07110.v3.1, Zosma06g07580.v3.1 |